- visual search for kinetic parameters implemented
- bugs fixed
Software v.
2.27
3/2/22
- Python web services: added date of data insertion as output field
- Python web services: search for date range of data insertion
Database v.
2.18
2/22/22
- new publications added
Software v.
2.26
12/28/21
- check log4j security vulnerability
- rounding of numbers improved (less positions after decimal point)
- functionality for a Python script for pathway search and pathway synonyms
- integration of more pathway synonym names
- functionality for a Python script for export of enzyme synomym names
- bug fixes:
- RESTful webservices reduced functionality during transfer procedure
- validation of ECnumbers extended for 7.x
- conversion of values to SI units
Database v.
2.17
12/20/21
- new publications added
Software v.
2.25
10/5/21
- bug fixes
Database v.
2.16
10/4/21
- new publications added
Database v.
2.15
8/6/21
- new publications added
Database v.
2.14
5/28/21
- new publications added
Software v.
2.24
5/11/21
- visual search tab: replacement of Google visualization JS API by D3JS API
- new EnyzmeML validation template
Software v.
2.23
4/21/21
- fixed bug for querying ions like Fe2+; observed in Google Chrome on Ubuntu
Software v.
2.22
3/15/21
- fixed bug in RESTFul web services Python Script #1 for case that no matching entries are found
- added JSON file of EnzymeML validation for download
Software v.
2.21
3/9/21
- export functionality added for ReactomeReactionID field in RESTFul web services
Software v.
2.20
3/1/21
- BTO BRENDA link update
- fixed bug in advanced search for positively charged ions like 'Fe2+', 'Na+'
Database v.
2.13
2/7/21
- new publications added
Software v.
2.19
1/12/21
- external links for enzyme references to ExPASy and IUBMB updated
- web services: added another example Python script including SBML export
- SBML export: wrong Uniprot annotation link corrected
- Solr query with Boolean 'or' resulted in restricted resultset by default -> fixed
Database v.
2.12
12/16/20
- new publications added
- updated mapping to MetaNetX, KEGG, ChEBI, MetaCyc, Rhea, Pubchem
Software v.
2.18
11/19/20
- restriction on query with many Boolean 'or' operators overriden
- dynamic functionality for information on server downtime added
- displays prominent link for de.NBI user evaluation form (smileys)
- SBML export: missing link to original source other than Pubmed added
Software v.
2.17
9/21/20
- bug fixed calculation / selection in advanced search
Software v.
2.16
9/8/20
- bug fixed display of data on visual search tab
- filter added for contact form
- SBML export: link to original source (non-Pubmed)
Software v.
2.15
8/3/20
- bug fixed on contact form forwarding
- bug fixed JSON output: escape backslash with double backslash
Software v.
2.14
6/30/20
- search for synonym pathway names
- bug fixed in RESTful services: sabioRestWebServices/suggestions eg http://sabio.h-its.org/sabioRestWebServices/suggestions/Tissues?searchTissues=lu
- method implemented for retrieval of JSON objects by PubMed ID: http://sabio.h-its.org/entry/getJSONentriesByPubMedId?pubmedId=7437446&printPretty=true
- visualization of retrieved data as graphs eg organisms, tissues, EC-numbers,...
Database v.
2.11
6/29/20
- new publications added
Database v.
2.09
9/20/19
- new publications added
Software v.
2.13
7/9/19
- new page for protein details
- common style for all details pages
- linking to Biomodels
Database v.
2.08
4/11/19
- tables added for external links including Rhea reaction, Reactome reaction, MetaCyc reaction, MetaNetX reaction, Uniprot Omim, KEGG pathway
- implementation of URL-mediated search encoded by links eg http://sabiork.h-its.org/newSearch?q=Organism:"Plasmodium falciparum" AND ECNumber:"4.2.1.11"
- implemented: usage of synonyms in advanced search tab eg "human" instead of "homo sapiens"
- fixed: "Reset" button did not always work
Software v.
2.11
12/10/18
- new web service method implemented: returns reaction modifier details
- bug fixed in web service method 'searchReactionParticipants'
- added cross-linking of compounds to: MetaCyc, MetaNetX, Reactome
- implementation of Bioschemas semantic markup
Database v.
2.07
10/10/18
- new publications included
Software v.
2.09
8/7/18
- added search facilities for BTO / NCBI terms in advanced search fields
- RESTful webservices: speed of response time for getSuggestions method highly increased by implementation of data caching
Software v.
2.08
6/11/18
- added functionality for linking to Cellosaurus (https://web.expasy.org/cellosaurus/); eg search for: hek-293 cell
- according to the EU-DSGVO, the linking to the HITS general HITS privacy / imprint policy was adjusted
Database v.
2.06
5/2/18
- new publications included
Software v.
2.07
4/23/18
- added search facilities for tissue synonyms
- added search facilities for organism synonyms
- added search facilities for dellular location synonyms
- added search facilities for SMILES string
- regular expression for new 10-digit UniportIDs updated
- added link to ChemSpider
- web-services: added search facilities for BTO
- web-services: added search facilities for NCBI
- web services: add methods to get database /software release info
Database v.
2.05
3/23/18
- new publications included
- direct submissions from STRENDA DB
Software v.
2.06
2/26/18
- output fields added for web services (tsv format) eg ChebiID
- output of big result sets (> 10000)
- additional single-step method for tsv output
Database v.
2.04
2/17/18
- new publications included
- NCBI taxonomy updated
Database v.
2.03
1/31/18
- new publications included
- content errors corrected
Software v.
2.05
11/13/17
- alternative export formats (Matlab, BioPAX level 2 and 3, ...) access by web services
- bug fix in SBML annotation syntax
- update web services manual
Software v.
2.04
11/8/17
- added BTO identifier in SBML output for tissue description in reaction annotation
- added export functionality for APM, DOT and SBGNML
- improved, corrected & extended manual for web services
- some bug fixing
Software v.
2.03
10/13/17
- added export functionality for BioPax level 2 and 3, Matlab, Octave, XPP
- update of links, publications, documentation
- outdated Adobe Flash used on statistics page replaced by Javascript
- some bug fixing
Software v.
2.02
5/19/17
- framework implemented for automatic transfer procedure
- bug fix on webservices permissions
Database v.
2.02
5/19/17
- new publications included
- content errors corrected
Software v.
2.01
2/21/17
- start of public SABIO-RK versioning
- CRUD interface for versioning implemented
- new video tutorials added
Database v.
2.01
2/17/17
- start of public SABIO-RK versioning
- newly curated data made accessible to the public
