SABIO-RK database and software updates

Software v. 2.9

8/7/18

- added search facilities for BTO / NCBI terms in advanced search fields
- RESTful webservices: speed of response time for getSuggestions method highly increased by implementation of data caching

Software v. 2.8

6/11/18

- added functionality for linking to Cellosaurus (https://web.expasy.org/cellosaurus/); eg search for: hek-293 cell
- according to the EU-DSGVO, the linking to the HITS general HITS privacy / imprint policy was adjusted

Database v. 2.6

5/2/18

- new publications included

Software v. 2.7

4/23/18

- added search facilities for tissue synonyms
- added search facilities for organism synonyms
- added search facilities for dellular location synonyms
- added search facilities for SMILES string
- regular expression for new 10-digit UniportIDs updated
- added link to ChemSpider
- web-services: added search facilities for BTO
- web-services: added search facilities for NCBI
- web services: add methods to get database /software release info

Database v. 2.5

3/23/18

- new publications included
- direct submissions from STRENDA DB

Software v. 2.6

2/26/18

- output fields added for web services (tsv format) eg ChebiID
- output of big result sets (> 10000)
- additional single-step method for tsv output

Database v. 2.4

2/17/18

- new publications included
- NCBI taxonomy updated

Database v. 2.3

1/31/18

- new publications included
- content errors corrected

Software v. 2.5

11/13/17

- alternative export formats (Matlab, BioPAX level 2 and 3, ...) access by web services
- bug fix in SBML annotation syntax
- update web services manual

Software v. 2.4

11/8/17

- added BTO identifier in SBML output for tissue description in reaction annotation
- added export functionality for APM, DOT and SBGNML
- improved, corrected & extended manual for web services
- some bug fixing

Software v. 2.3

10/13/17

- added export functionality for BioPax level 2 and 3, Matlab, Octave, XPP
- update of links, publications, documentation
- outdated Adobe Flash used on statistics page replaced by Javascript
- some bug fixing

Database v. 2.2

5/19/17

- new publications included
- content errors corrected

Software v. 2.2

5/19/17

- framework implemented for automatic transfer procedure
- bug fix on webservices permissions

Software v. 2.1

2/21/17

- start of public SABIO-RK versioning
- CRUD interface for versioning implemented
- new video tutorials added

Database v. 2.1

2/17/17

- start of public SABIO-RK versioning
- newly curated data made accessible to the public
- about 55800 single entries accessible